fedi_dmri_fod

Synopsis

FOD estimation for neonatal dMRI using a pretrained Spherical CNN model.

Usage

fedi_dmri_fod [-h] -d <file> -a <file> -e <file> -o <file> [-m <file>]

Options

Help

• -h, –help Show this help message and exit

Mandatory

• -d, –dmri <file> Path to the input dMRI file

• -a, –bval <file> Path to the b-values file

• -e, –bvec <file> Path to the b-vectors file

• -o, –out <file> Output filename (NIfTI format)

Optional

• -m, –mask <file> Path to brain mask file

References

Snoussi, Haykel, and Davood Karimi. Equivariant Spherical CNNs for Accurate Fiber Orientation Distribution Estimation in Neonatal Diffusion MRI with Reduced Acquisition Time. Frontiers in Neuroscience 2025.